PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07988.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 366aa    MW: 41422.1 Da    PI: 5.6308
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07988.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.7e-161462148
                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W++eEd +l+d+++  G+g +W + ++++g++R++k+c++rw++yl
  Rsa1.0_07988.1_g00002.1 14 KGPWSPEEDAKLKDYIENNGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 62
                             79*********************************************97 PP

2Myb_DNA-binding38.52.7e-1269111246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              g +++eEd ++ ++    G++ W+ Ia+ ++ gRt++++k++w++
  Rsa1.0_07988.1_g00002.1  69 GGFSEEEDNIICNLYVTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                              569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.829962IPR017930Myb domain
SuperFamilySSF466897.35E-2611109IPR009057Homeodomain-like
SMARTSM007174.4E-111364IPR001005SANT/Myb domain
PfamPF002491.1E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-241569IPR009057Homeodomain-like
CDDcd001679.67E-81662No hitNo description
PROSITE profilePS5129421.38563117IPR017930Myb domain
SMARTSM007172.2E-1167115IPR001005SANT/Myb domain
PfamPF002496.4E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2370117IPR009057Homeodomain-like
CDDcd001676.36E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE NNGTGGNWIA LPQKIGLRRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC NLYVTIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLNK  120
QRKEFQEARM KQEMVMIKRQ EQGQSQSNAS RDLYLNNMFG SSPWPLLPQL PSPHHQVPLV  180
MMEPRSYDYY QMTPSCNFEQ KPMITLKNMV KTEEEPERTN PDHHHPEDSI TNPFDFSFSQ  240
LLLDPNYYLE SGGGEGELAI TSSSTNSSLP NTGADHHQQQ EILQWFGSSN FQTEAINDMF  300
LNNDIANLET NENTRFYGNS PVTGAAAALA GGTTSTSADQ STISWEEITS LVNSDDASYF  360
NGLNHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2274720.0AK227472.1 Arabidopsis thaliana mRNA for transcription factor like protein, complete cds, clone: RAFL14-10-M08.
GenBankAY5196470.0AY519647.1 Arabidopsis thaliana MYB transcription factor (At5g65790) mRNA, complete cds.
GenBankBT0059940.0BT005994.1 Arabidopsis thaliana At5g65790 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626384.10.0PREDICTED: transcription factor RAX3
SwissprotQ9M2Y91e-124RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A0D3BEM90.0A0A0D3BEM9_BRAOL; Uncharacterized protein
STRINGBra024419.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29412568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.11e-180myb domain protein 68